I am currently using Linux Mint (after a long stint of using MX Linux) after learning it handles Nvidia graphics cards flawlessly, which I am grateful for. Whatever grief I have given Ubuntu in the past, I take it back because when they make something work, it is solid.
Anyways, like most distros these days, Flatpaks show up alongside native packages in the package manager / app store. I used to have a bias towards getting the natively packed version, but these days, I am choosing Flatpaks, precisely because I know they will be the latest version.
This includes Blender, Cura, Prusaslicer, and just now QBittorrent. I know this is probably dumb, but I choose the version based on which has the nicer icon.
There is a bit more nuance to it I suppose - I like Appimages for “complicated” apps, i.e. big GUI apps like Inkscape where I prefer native packages for terminal tools. The nice thing about Appimages is that there just isn’t much in the way of integration and therefore its really easy to just try something out with no risk of installing a bunch of extra dependencies and no way of breaking your system - I use Appimagelauncher for managing them but have been considering swapping to something like Appman/AM.
The other thing that sometimes puts me off of native packages is having to deal with excessive numbers of PPAs or other repos when they aren’t in the main ones.